Single-cell Pediatric Cancer Atlas Portal
Database of uniformly processed single-cell data from pediatric cancer clinical samples and xenografts
ScPCA Portal currently has
7Projects
29Cancer Types
189Total Samples
5Labs
Explore the available cancer types.
Anaplastic ganglioglioma
Acute myeloid leukemia
Diffuse midline glioma
Neuroblastoma
Desmoplastic ganglioglioma
Subependymoma
Myxopapillary ependymoma
Anaplastic glioma
Rhabdomyosarcoma
Low grade glioma
Pilocytic astrocytoma
Ependymoma
Glioblastoma
Schwannoma
T-myeloid mixed phenotype acute leukemia
Dysplastic gangliocytoma
Ganglioglioma
Non-cancerous
Primitive neuroectodermal tumor
Medulloblastoma
High grade glioma
Anaplastic ependymoma
Ganglioglioma/ATRT
Wilms tumor
Pleomorphic xanthoastrocytoma
Pilomyxoid astrocytoma
Dysembryoplastic neuroepithelial tumor
Anaplastic astrocytoma
Alex’s Lemonade Stand Foundation (ALSF) funded 10 childhood cancer investigators from 8 different institutions working on single-cell profiling to create a publicly available atlas of single-cell pediatric cancer data.
How is the data processed?Learn More
All of the data is uniformly processed with an open source and freely available pipeline which uses alevin-fry, and Bioconductor packages.
What am I downloading?Learn More
When you download from the ScPCA Portal, you will receive both filtered and unfiltered count matrices for each sample along with sample and project metadata.
Sign up for updatesReceive updates about new datasets and updates to the portal.
